STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araJDrug resistance transporter, Bcr/CflA family protein [Campylobacter lari RM2100]. (409 aa)    
Predicted Functional Partners:
HCAN_0465
4-carboxymuconolactone decarboxylase.
  
    0.526
HCAN_0468
Hypothetical protein containing a COG1917 uncharacterized conserved protein domain that contains a double-stranded beta-helix domain.
       0.512
putA
Proline/pyrroline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 0.512
rmuC
DNA recombination protein RmuC family protein.
       0.488
fadE16
Putative acyl-CoA dehydrogenase.
     
 0.427
Your Current Organism:
Helicobacter canadensis
NCBI taxonomy Id: 537970
Other names: H. canadensis MIT 98-5491, Helicobacter canadensis ATCC 700968, Helicobacter canadensis H438, Helicobacter canadensis MIT 98-5491, Helicobacter canadensis NCTC 13241, Helicobacter canadensis NLEP-16143, Helicobacter canadensis str. MIT 98-5491, Helicobacter canadensis strain MIT 98-5491
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.