STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCAN_0658Hypothetical protein containing a partial COG0438 RfaG glycosyltransferase domain. (369 aa)    
Predicted Functional Partners:
HCAN_1461
Hypothetical protein containing a COG1073 hydrolases of the alpha/beta superfamily domain.
    
   0.829
asnB-2
Asparagine synthetase [glutamine-hydrolyzing] [Gramella forsetii KT0803].
  
    0.774
HCAN_0659
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- benzoquinol methylase [Cytophaga hutchinsonii ATCC 33406].
       0.773
HCAN_0660
Hypothetical protein.
       0.773
HCAN_0667
Conserved hypothetical protein.
 
    0.739
HCAN_0661
Hypothetical protein.
       0.697
glmU
Bifunctional protein glmU [Includes: UDP-N- acetylglucosamine pyrophosphorylase (N- acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase, Bacterial transferase hexapeptide repeat; High confidence in function and specificity; COG: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I- patch acetyltransferase domains).
    
  0.665
HCAN_0668
Hypothetical protein containing a COG0399 WecE predicted pyridoxal phosphate-dependent enzyme, apparently involved in regulation of cell wall biogenesis, domain; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.662
HCAN_0664
Putative dehydrogenase containing a COG0673 MviM predicted dehydrogenases and related proteins domain.
  
    0.653
HCAN_0669
Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase [Campylobacter lari RM2100]; Belongs to the APS kinase family.
  
    0.650
Your Current Organism:
Helicobacter canadensis
NCBI taxonomy Id: 537970
Other names: H. canadensis MIT 98-5491, Helicobacter canadensis ATCC 700968, Helicobacter canadensis H438, Helicobacter canadensis MIT 98-5491, Helicobacter canadensis NCTC 13241, Helicobacter canadensis NLEP-16143, Helicobacter canadensis str. MIT 98-5491, Helicobacter canadensis strain MIT 98-5491
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.