STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001696535_02894Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (255 aa)    
Predicted Functional Partners:
GCA_001696535_02892
Unannotated protein.
 
   0.829
GCA_001696535_02893
Unannotated protein.
 
  
 0.818
GCA_001696535_02411
Unannotated protein.
  
 
 0.792
GCA_001696535_02890
Unannotated protein.
       0.773
UgpC-2
Unannotated protein; Belongs to the ABC transporter superfamily.
       0.773
GCA_001696535_02889
Unannotated protein.
  
    0.749
GCA_001696535_01862
Unannotated protein.
 
 
 0.729
GCA_001696535_02888
Unannotated protein.
 
    0.595
GCA_001696535_02887
Unannotated protein.
 
     0.584
GCA_001696535_03027
Unannotated protein.
  
 
 0.549
Your Current Organism:
Stappia indica
NCBI taxonomy Id: 538381
Other names: CCTCC AB 208228, LMG 24625, LMG:24625, MCCC 1A01226, S. indica, Stappia indica Lai et al. 2010, Stappia sp. B106, strain B106, strain PR56-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.