STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001696535_03332Unannotated protein. (599 aa)    
Predicted Functional Partners:
GCA_001696535_02411
Unannotated protein.
  
  
 0.782
GCA_001696535_03333
Unannotated protein.
 
     0.718
GCA_001696535_03027
Unannotated protein.
  
 
 0.682
GCA_001696535_03085
Unannotated protein.
    
 
 0.628
atpA
Unannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
   0.582
GCA_001696535_03350
Unannotated protein.
  
 
 0.555
GCA_001696535_02768
Unannotated protein.
  
    0.474
GCA_001696535_03029
Unannotated protein.
  
 
 0.467
GCA_001696535_02406
Unannotated protein.
  
  
 0.450
GCA_001696535_02817
Unannotated protein.
  
 
 0.444
Your Current Organism:
Stappia indica
NCBI taxonomy Id: 538381
Other names: CCTCC AB 208228, LMG 24625, LMG:24625, MCCC 1A01226, S. indica, Stappia indica Lai et al. 2010, Stappia sp. B106, strain B106, strain PR56-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.