STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001696535_03640Unannotated protein. (320 aa)    
Predicted Functional Partners:
GCA_001696535_03641
Unannotated protein.
 
  
 0.925
GCA_001696535_03642
Unannotated protein.
 
  
 0.900
GCA_001696535_03643
Unannotated protein; Belongs to the hyi family.
  
 0.884
GCA_001696535_03639
Unannotated protein.
 
   
 0.852
GCA_001696535_03638
Unannotated protein.
  
  
 0.552
GCA_001696535_02172
Unannotated protein.
 
  
 0.514
GCA_001696535_03637
Unannotated protein.
  
    0.486
GCA_001696535_01095
Unannotated protein; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.477
GCA_001696535_03636
Unannotated protein.
       0.471
PcaC
Unannotated protein.
  
  
 0.433
Your Current Organism:
Stappia indica
NCBI taxonomy Id: 538381
Other names: CCTCC AB 208228, LMG 24625, LMG:24625, MCCC 1A01226, S. indica, Stappia indica Lai et al. 2010, Stappia sp. B106, strain B106, strain PR56-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.