Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001696535_03892 | GCA_001696535_03894 | GCA_001696535_03892 | GCA_001696535_03894 | Unannotated protein. | Unannotated protein. | 0.716 |
GCA_001696535_03894 | GCA_001696535_03892 | GCA_001696535_03894 | GCA_001696535_03892 | Unannotated protein. | Unannotated protein. | 0.716 |
GCA_001696535_03894 | HrpB | GCA_001696535_03894 | GCA_001696535_02293 | Unannotated protein. | Unannotated protein. | 0.830 |
GCA_001696535_03894 | RpsA | GCA_001696535_03894 | GCA_001696535_03852 | Unannotated protein. | Unannotated protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.904 |
GCA_001696535_03894 | recO | GCA_001696535_03894 | GCA_001696535_00073 | Unannotated protein. | Unannotated protein; Involved in DNA repair and RecF pathway recombination. | 0.720 |
GCA_001696535_03894 | rnr | GCA_001696535_03894 | GCA_001696535_00684 | Unannotated protein. | Unannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.778 |
GCA_001696535_03894 | rph | GCA_001696535_03894 | GCA_001696535_04505 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.936 |
GCA_001696535_03894 | rplD | GCA_001696535_03894 | GCA_001696535_00925 | Unannotated protein. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.692 |
GCA_001696535_03894 | rpsD | GCA_001696535_03894 | GCA_001696535_01114 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.882 |
GCA_001696535_03894 | rpsE | GCA_001696535_03894 | GCA_001696535_00909 | Unannotated protein. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.739 |
GCA_001696535_03894 | rpsK | GCA_001696535_03894 | GCA_001696535_00903 | Unannotated protein. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.854 |
HrpB | GCA_001696535_03894 | GCA_001696535_02293 | GCA_001696535_03894 | Unannotated protein. | Unannotated protein. | 0.830 |
HrpB | RpsA | GCA_001696535_02293 | GCA_001696535_03852 | Unannotated protein. | Unannotated protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.921 |
HrpB | rph | GCA_001696535_02293 | GCA_001696535_04505 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.818 |
HrpB | rplD | GCA_001696535_02293 | GCA_001696535_00925 | Unannotated protein. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.641 |
HrpB | rpsD | GCA_001696535_02293 | GCA_001696535_01114 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.913 |
HrpB | rpsE | GCA_001696535_02293 | GCA_001696535_00909 | Unannotated protein. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.815 |
HrpB | rpsK | GCA_001696535_02293 | GCA_001696535_00903 | Unannotated protein. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.886 |
RpsA | GCA_001696535_03894 | GCA_001696535_03852 | GCA_001696535_03894 | Unannotated protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Unannotated protein. | 0.904 |
RpsA | HrpB | GCA_001696535_03852 | GCA_001696535_02293 | Unannotated protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Unannotated protein. | 0.921 |
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