STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001696535_04425Unannotated protein. (271 aa)    
Predicted Functional Partners:
GCA_001696535_04423
Unannotated protein.
 
 0.996
NikB
Unannotated protein.
 
 0.990
GCA_001696535_04421
Unannotated protein.
 
 
 0.988
nikD
Unannotated protein; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family.
 
 
0.988
GCA_001696535_02385
Unannotated protein.
  
 0.947
GCA_001696535_03575
Unannotated protein.
  
 0.947
GCA_001696535_02176
Unannotated protein.
  
 0.937
GCA_001696535_03228
Unannotated protein.
  
 0.933
GCA_001696535_00524
Unannotated protein.
  
 0.928
GCA_001696535_01655
Unannotated protein.
  
 0.871
Your Current Organism:
Stappia indica
NCBI taxonomy Id: 538381
Other names: CCTCC AB 208228, LMG 24625, LMG:24625, MCCC 1A01226, S. indica, Stappia indica Lai et al. 2010, Stappia sp. B106, strain B106, strain PR56-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.