STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ18755.1Isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)    
Predicted Functional Partners:
AMQ18756.1
Bacteriochlorophyll synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.841
pcp
Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
       0.682
AMQ18385.1
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.576
AMQ18754.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.566
dtdA
D-tyrosyl-tRNA(Tyr) deacylase; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.
  
     0.551
rpl37e
50S ribosomal protein L37; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
  
     0.494
rpl21e
50S ribosomal protein L21; Mediates an interaction between 5S and domains II and V of 23S; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL21 family.
  
     0.442
Your Current Organism:
Thermococcus peptonophilus
NCBI taxonomy Id: 53952
Other names: ATCC 700098, CIP 104782, DSM 10343, JCM 9653, T. peptonophilus, strain OG-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.