STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD52978.1WD40-like Beta Propeller Repeat. (1026 aa)    
Predicted Functional Partners:
SFF16555.1
Beta-barrel assembly machine subunit BamD.
 
 
 0.807
SFD70268.1
Hypothetical protein.
 
  
 0.765
SFE83615.1
TonB family C-terminal domain-containing protein.
 
 
 
 0.726
SFE95221.1
40-residue YVTN family beta-propeller repeat-containing protein.
   
   0.711
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
  
  
 0.690
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
  
 
 0.689
SFE12485.1
Tetratricopeptide repeat-containing protein.
 
   
 0.669
SFD86254.1
Outer membrane receptor proteins, mostly Fe transport.
 
 
 
 0.660
SFD59901.1
TonB family C-terminal domain-containing protein.
  
     0.638
SFE12440.1
TonB family C-terminal domain-containing protein.
  
     0.638
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.