STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD53331.1Serine protease, S1-C subfamily, contains C-terminal PDZ domain. (481 aa)    
Predicted Functional Partners:
SFE01457.1
Hypothetical protein.
  
 
 0.837
SFE65370.1
3-hydroxyacyl-CoA dehydrogenase / 3a,7a,12a-trihydroxy-5b-cholest-24-enoyl-CoA hydratase.
    
 0.787
SFD91272.1
Trypsin-like peptidase domain-containing protein.
  
     0.642
SFE12485.1
Tetratricopeptide repeat-containing protein.
  
 0.569
SFE67992.1
Serine/threonine protein kinase.
  
 0.569
rplI
Large subunit ribosomal protein L9; Binds to the 23S rRNA.
 
 
   0.555
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.501
SFE66205.1
Serine/threonine protein kinase.
    
  0.485
SFD77083.1
Hypothetical protein.
  
  
 0.467
SFF31518.1
HAMP domain-containing protein.
  
  
 0.467
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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