Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFD57935.1 | SFD57948.1 | SAMN02745121_00706 | SAMN02745121_00707 | Type I phosphodiesterase / nucleotide pyrophosphatase. | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.516 |
SFD57935.1 | SFD57966.1 | SAMN02745121_00706 | SAMN02745121_00708 | Type I phosphodiesterase / nucleotide pyrophosphatase. | Hypothetical protein. | 0.516 |
SFD57935.1 | SFD57975.1 | SAMN02745121_00706 | SAMN02745121_00709 | Type I phosphodiesterase / nucleotide pyrophosphatase. | Arylsulfatase A. | 0.662 |
SFD57948.1 | SFD57935.1 | SAMN02745121_00707 | SAMN02745121_00706 | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Type I phosphodiesterase / nucleotide pyrophosphatase. | 0.516 |
SFD57948.1 | SFD57966.1 | SAMN02745121_00707 | SAMN02745121_00708 | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Hypothetical protein. | 0.773 |
SFD57948.1 | SFD57975.1 | SAMN02745121_00707 | SAMN02745121_00709 | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Arylsulfatase A. | 0.757 |
SFD57948.1 | SFD57995.1 | SAMN02745121_00707 | SAMN02745121_00710 | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Hypothetical protein. | 0.424 |
SFD57948.1 | SFE00933.1 | SAMN02745121_00707 | SAMN02745121_02656 | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | tRNA-(ms[2]io[6]A)-hydroxylase. | 0.576 |
SFD57948.1 | SFE61708.1 | SAMN02745121_00707 | SAMN02745121_04883 | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.410 |
SFD57948.1 | prmA | SAMN02745121_00707 | SAMN02745121_07740 | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | [LSU ribosomal protein L11P]-lysine N-methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.697 |
SFD57948.1 | rlmL | SAMN02745121_00707 | SAMN02745121_00203 | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.538 |
SFD57966.1 | SFD57935.1 | SAMN02745121_00708 | SAMN02745121_00706 | Hypothetical protein. | Type I phosphodiesterase / nucleotide pyrophosphatase. | 0.516 |
SFD57966.1 | SFD57948.1 | SAMN02745121_00708 | SAMN02745121_00707 | Hypothetical protein. | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.773 |
SFD57966.1 | SFD57975.1 | SAMN02745121_00708 | SAMN02745121_00709 | Hypothetical protein. | Arylsulfatase A. | 0.757 |
SFD57966.1 | SFD57995.1 | SAMN02745121_00708 | SAMN02745121_00710 | Hypothetical protein. | Hypothetical protein. | 0.424 |
SFD57975.1 | SFD57935.1 | SAMN02745121_00709 | SAMN02745121_00706 | Arylsulfatase A. | Type I phosphodiesterase / nucleotide pyrophosphatase. | 0.662 |
SFD57975.1 | SFD57948.1 | SAMN02745121_00709 | SAMN02745121_00707 | Arylsulfatase A. | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.757 |
SFD57975.1 | SFD57966.1 | SAMN02745121_00709 | SAMN02745121_00708 | Arylsulfatase A. | Hypothetical protein. | 0.757 |
SFD57975.1 | SFD57995.1 | SAMN02745121_00709 | SAMN02745121_00710 | Arylsulfatase A. | Hypothetical protein. | 0.432 |
SFD57995.1 | SFD57948.1 | SAMN02745121_00710 | SAMN02745121_00707 | Hypothetical protein. | RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.424 |
page 1 of 2