STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemLGlutamate-1-semialdehyde 2,1-aminomutase. (449 aa)    
Predicted Functional Partners:
SFD83000.1
Porphobilinogen synthase; Belongs to the ALAD family.
 
 
 0.984
SFF19357.1
Amino acid adenylation domain-containing protein.
  
 0.984
SFF19374.1
Amino acid adenylation domain-containing protein.
  
 0.983
SFD52923.1
Uroporphyrinogen III methyltransferase / synthase.
 
 
 0.975
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
 0.974
SFF36086.1
Amino acid adenylation domain-containing protein.
 
 0.966
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.958
SFF36120.1
Amino acid adenylation domain-containing protein.
 
 0.957
SFF50914.1
Phosphopantetheine attachment site.
  
 0.944
SFF17364.1
Amino acid adenylation domain-containing protein.
  
 0.937
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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