SFD75251.1 protein (Nannocystis exedens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFD75251.1

Ribosome-associated heat shock protein Hsp15. (147 aa)

Predicted Functional Partners:

rplS

0.967

rpmB

0.959

rplQ

0.955

rpmH

0.950

rplM

0.948

rplN

0.948

rplV

0.947

rpmI

0.946

rplT

0.946

rplU

0.946

Your Current Organism:

Nannocystis exedens

NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFD75251.1	rplM	SAMN02745121_01366	SAMN02745121_05724	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.948
SFD75251.1	rplN	SAMN02745121_01366	SAMN02745121_07215	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.948
SFD75251.1	rplQ	SAMN02745121_01366	SAMN02745121_07229	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L17P.	0.955
SFD75251.1	rplS	SAMN02745121_01366	SAMN02745121_01248	Ribosome-associated heat shock protein Hsp15.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.967
SFD75251.1	rplT	SAMN02745121_01366	SAMN02745121_00105	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.946
SFD75251.1	rplU	SAMN02745121_01366	SAMN02745121_01684	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.946
SFD75251.1	rplV	SAMN02745121_01366	SAMN02745121_07210	Ribosome-associated heat shock protein Hsp15.	Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.947
SFD75251.1	rpmB	SAMN02745121_01366	SAMN02745121_02875	Ribosome-associated heat shock protein Hsp15.	Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.959
SFD75251.1	rpmH	SAMN02745121_01366	SAMN02745121_02565	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.950
SFD75251.1	rpmI	SAMN02745121_01366	SAMN02745121_00104	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.946
rplM	SFD75251.1	SAMN02745121_05724	SAMN02745121_01366	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosome-associated heat shock protein Hsp15.	0.948
rplM	rplN	SAMN02745121_05724	SAMN02745121_07215	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rplM	rplQ	SAMN02745121_05724	SAMN02745121_07229	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L17P.	0.997
rplM	rplS	SAMN02745121_05724	SAMN02745121_01248	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.996
rplM	rplT	SAMN02745121_05724	SAMN02745121_00105	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.998
rplM	rplU	SAMN02745121_05724	SAMN02745121_01684	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplM	rplV	SAMN02745121_05724	SAMN02745121_07210	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplM	rpmB	SAMN02745121_05724	SAMN02745121_02875	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.996
rplM	rpmH	SAMN02745121_05724	SAMN02745121_02565	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.995
rplM	rpmI	SAMN02745121_05724	SAMN02745121_00104	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.996