STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD78883.1Sigma-54 interaction domain-containing protein. (484 aa)    
Predicted Functional Partners:
SFD83267.1
Response regulator receiver domain-containing protein.
  
 0.931
SFF46276.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.930
SFF46441.1
CheR methyltransferase, all-alpha domain.
  
 0.930
SFF48439.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.921
SFD77083.1
Hypothetical protein.
  
 0.892
SFF31518.1
HAMP domain-containing protein.
  
 0.892
SFF46358.1
Signal transduction histidine kinase.
  
 0.892
SFD93617.1
Signal transduction histidine kinase.
  
 0.878
SFE33180.1
Signal transduction histidine kinase.
  
 0.872
SFE43613.1
PAS domain S-box-containing protein.
  
 0.862
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.