STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD95567.1Threonine dehydrogenase. (404 aa)    
Predicted Functional Partners:
SFF12789.1
4-aminobutyrate aminotransferase.
  
 0.860
SFE07641.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.855
SFD75633.1
Formate dehydrogenase.
    
 0.822
SFE40264.1
2-oxoisovalerate dehydrogenase E1 component.
  
 
 0.815
SFD74577.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
    
 0.798
SFD83572.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
    
 0.798
SFE86655.1
Hypothetical protein.
  
 
 0.795
SFD94771.1
NAD(P)H-flavin reductase.
  
 
 0.791
SFD95557.1
Hypothetical protein.
       0.773
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.718
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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