STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE00093.1Phytoene dehydrogenase-related protein. (507 aa)    
Predicted Functional Partners:
SFD79074.1
Phytoene synthase.
 
 
 0.810
SFD52742.1
Farnesyl-diphosphate farnesyltransferase.
 
 
 0.776
SFE00121.1
Superfamily II DNA or RNA helicase, SNF2 family.
       0.773
SFD52729.1
Squalene synthase HpnC.
 
 
 0.742
SFE97405.1
Carotenoid 1,2-hydratase.
 
 
 0.732
SFE93960.1
Demethylspheroidene O-methyltransferase.
 
 
 0.702
SFE13218.1
Spheroidene monooxygenase.
 
 
 0.654
SFE97423.1
1-hydroxycarotenoid 3,4-desaturase.
  
     0.638
SFD74979.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
  
  0.620
SFF12789.1
4-aminobutyrate aminotransferase.
  
 
 0.583
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.