STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE21168.1Isocitrate lyase. (425 aa)    
Predicted Functional Partners:
SFE21157.1
Malate synthase.
 
 0.999
SFE43148.1
Allosteric NADP-dependent malic enzyme.
   
 
 0.967
SFF12789.1
4-aminobutyrate aminotransferase.
     
 0.851
SFE54181.1
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
 
 0.846
SFE01870.1
Entner-Doudoroff aldolase.
     
 0.813
SFE07641.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.808
SFE29151.1
3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit.
    
  0.805
SFE21284.1
Ureidoglycolate lyase.
     
 0.801
SFD66856.1
Glycolate oxidase.
     
 0.800
SFE56827.1
D-amino-acid:oxygen oxidoreductase.
     
 0.796
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.