STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE42991.1MerR HTH family regulatory protein. (161 aa)    
Predicted Functional Partners:
SFE29521.1
Transcriptional regulator, MerR family.
  
 
 
 0.772
SFE43148.1
Allosteric NADP-dependent malic enzyme.
    
  0.759
SFD69278.1
DNA-binding transcriptional regulator, MerR family.
  
     0.753
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.707
SFE00966.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.682
SFD65708.1
Heterodimeric methylmalonyl-CoA mutase small subunit.
     
 0.678
SFD65717.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
     
 0.678
SFE43021.1
GTP cyclohydrolase I.
    
  0.612
SFE42967.1
Pteridine reductase.
       0.547
SFE43036.1
Probable phosphoglycerate mutase.
       0.533
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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