STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE54167.1GAF domain-containing protein. (162 aa)    
Predicted Functional Partners:
SFE16546.1
Sensor domain CHASE3-containing protein.
    
 0.827
SFD77083.1
Hypothetical protein.
    
 0.814
SFF31518.1
HAMP domain-containing protein.
    
 0.814
SFF46358.1
Signal transduction histidine kinase.
    
 0.814
ribB
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.805
SFE12499.1
Adenylate cyclase.
    
  0.789
SFE73719.1
Signal transduction histidine kinase.
    
 0.762
SFF00881.1
Signal transduction histidine kinase.
    
 0.762
SFF27787.1
Signal transduction histidine kinase.
    
 0.762
SFE55987.1
Homocysteine S-methyltransferase.
    
  0.735
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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