STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF01611.1Ribonuclease Z. (329 aa)    
Predicted Functional Partners:
SFF01592.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
       0.773
SFF31038.1
Hypothetical protein.
   
   0.770
SFF34984.1
Predicted 2-oxoglutarate-and Fe(II)-dependent dioxygenase YbiX.
  
     0.643
SFE34539.1
Cyclic nucleotide-binding domain-containing protein.
 
     0.629
SFD70004.1
RNAse G.
  
 
 0.593
SFE28511.1
Predicted 2-oxoglutarate-and Fe(II)-dependent dioxygenase YbiX.
  
     0.586
SFE56507.1
Cycloeucalenol cycloisomerase.
  
     0.580
SFE23096.1
2OG-Fe(II) oxygenase superfamily protein.
  
     0.554
SFD74664.1
Predicted 2-oxoglutarate-and Fe(II)-dependent dioxygenase YbiX.
  
     0.504
SFF01758.1
Hypothetical protein.
  
     0.496
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.