STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF12774.1isopenicillin-N N-acyltransferase like protein. (387 aa)    
Predicted Functional Partners:
SFF12789.1
4-aminobutyrate aminotransferase.
 
     0.939
SFF12764.1
Taurine---2-oxoglutarate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.813
SFE83452.1
Hypothetical protein.
  
     0.742
SFE52761.1
Hypothetical protein.
  
     0.738
SFE13357.1
Hypothetical protein.
  
     0.736
SFE57060.1
Hypothetical protein.
  
     0.720
SFD56019.1
isopenicillin-N epimerase.
   
 
  0.715
SFD77019.1
NlpC/P60 family protein.
  
     0.702
SFE07323.1
Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted metal-binding C-terminal domain.
  
     0.650
SFF40959.1
Glycosyl transferase family 2.
  
     0.645
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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