STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF39098.1Sodium transport system permease protein. (404 aa)    
Predicted Functional Partners:
SFF39091.1
Sodium transport system ATP-binding protein.
 
 
 0.988
SFF18051.1
ABC-type multidrug transport system, ATPase component.
  
 
 0.815
SFE77779.1
ABC transporter.
  
 
 0.763
SFF46276.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
  0.664
SFF46441.1
CheR methyltransferase, all-alpha domain.
  
  0.664
SFD83267.1
Response regulator receiver domain-containing protein.
  
  0.647
SFF39064.1
Protein of unknown function.
       0.560
SFF39078.1
Caspase domain-containing protein.
       0.560
SFE28072.1
Imidazolonepropionase.
 
     0.505
SFD77821.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.477
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.