STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF39997.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (246 aa)    
Predicted Functional Partners:
SFF39978.1
Hypothetical protein.
 
     0.926
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
 
 
 0.925
SFF39963.1
ADP-heptose:LPS heptosyltransferase.
 
     0.912
SFF36086.1
Amino acid adenylation domain-containing protein.
  
 
 0.865
SFF40005.1
D,D-heptose 1,7-bisphosphate phosphatase.
 
  
 0.860
SFF36120.1
Amino acid adenylation domain-containing protein.
  
 0.837
SFF12789.1
4-aminobutyrate aminotransferase.
  
 
 0.831
SFF30333.1
Glycosyl transferase family 2.
  
     0.750
SFE85764.1
Ketoacyl-synthetase C-terminal extension.
  
 
 0.749
SFE21503.1
Enoyl-(Acyl carrier protein) reductase.
  
  
  0.747
Your Current Organism:
Nannocystis exedens
NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens
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