STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA31823.1TIGR00252 family protein; KEGG: sat:SYN_00772 1.3e-16 endonuclease K07460; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0102 family. (119 aa)    
Predicted Functional Partners:
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.819
rbgA
Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
       0.818
comM
Mg chelatase-like protein; KEGG: ccm:Ccan_16640 6.3e-127 competence protein comM K07391; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.795
yidA
HAD hydrolase, family IIB; KEGG: cbk:CLL_A2915 1.1e-19 phosphatase YidA K07024; Psort location: Cytoplasmic, score: 7.50.
       0.781
KXA31363.1
comF family protein; KEGG: ccm:Ccan_18380 1.7e-14 protein COM101A; Psort location: Cytoplasmic, score: 7.50.
 
    0.732
engD
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.699
smf
DNA protecting protein DprA; KEGG: ccm:Ccan_01460 1.2e-43 protein smf K04096; Psort location: Cytoplasmic, score: 7.50.
 
    0.657
yurY
FeS assembly ATPase SufC; KEGG: ppo:PPM_1514 8.6e-68 yurY; phosphate import ATP-binding protein pstB Phosphate-transporting ATPase; ABC phosphate transporter K09013; Psort location: Cytoplasmic, score: 9.97.
       0.509
nifU
SUF system FeS assembly protein, NifU family; KEGG: hbo:Hbor_34450 4.6e-08 cysteine desulfurase; Psort location: Cytoplasmic, score: 7.50.
       0.506
csd
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.504
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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