STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA31826.1SufB/sufD domain protein; KEGG: suc:ECTR2_773 1.5e-12 sufB; feS assembly protein SufB K09014; Psort location: Cytoplasmic, score: 7.50. (349 aa)    
Predicted Functional Partners:
yurY
FeS assembly ATPase SufC; KEGG: ppo:PPM_1514 8.6e-68 yurY; phosphate import ATP-binding protein pstB Phosphate-transporting ATPase; ABC phosphate transporter K09013; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.999
csd
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.995
nifU
SUF system FeS assembly protein, NifU family; KEGG: hbo:Hbor_34450 4.6e-08 cysteine desulfurase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.985
KXA31825.1
KEGG: suc:ECTR2_773 1.1e-131 sufB; feS assembly protein SufB K09014; Psort location: Cytoplasmic, score: 7.50.
 
  
0.957
cymR
Putative HTH-type transcriptional regulator CymR; KEGG: hmc:HYPMC_1094 2.1e-16 Rrf2 family transcriptional regulator K04487; Psort location: Cytoplasmic, score: 7.50.
     
 0.785
nifS
KEGG: clb:Clo1100_2273 4.1e-100 cysteine desulfurase NifS; K04487 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.749
yhhT_3
Hypothetical protein; KEGG: cfu:CFU_3842 2.0e-23 perM; putative permease; Psort location: CytoplasmicMembrane, score: 10.00.
       0.709
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
    0.538
alaS_5
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.515
yidA
HAD hydrolase, family IIB; KEGG: cbk:CLL_A2915 1.1e-19 phosphatase YidA K07024; Psort location: Cytoplasmic, score: 7.50.
       0.504
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.