STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfHTranscriptional regulator, GntR family; KEGG: cnc:CNE_2c19120 3.2e-13 phnA2; phosphonoacetate hydrolase PhnA; Psort location: Cytoplasmic, score: 7.50. (225 aa)    
Predicted Functional Partners:
kdgR
IclR helix-turn-helix protein; KEGG: hiq:CGSHiGG_08780 4.4e-16 araD; L-ribulose-5-phosphate 4-epimerase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.641
KXA28632.1
IclR helix-turn-helix protein; KEGG: cnc:CNE_2c17880 8.3e-09 mdlB; (S)-mandelate dehydrogenase MdlB; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.593
KXA31675.1
Hypothetical protein; KEGG: ssd:SPSINT_2146 0.0089 Zinc metalloproteinase.
       0.503
KXA31872.1
Hypothetical protein; KEGG: dra:DR_0309 8.3e-10 tuf; elongation factor Tu K02358; Psort location: Cytoplasmic, score: 9.67.
  
  
 0.468
psuK
HTH domain protein; KEGG: cbj:H04402_01237 3.1e-70 pseudouridine kinase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.434
prmC
protein-(glutamine-N5) methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
   
   0.405
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.