STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yocH3D domain protein; KEGG: ssb:SSUBM407_0900 4.2e-07 zmpC; IgA-specific zinc metalloproteinase. (333 aa)    
Predicted Functional Partners:
KXA28965.1
Hypothetical protein.
 
  
 0.895
rsmA
KEGG: bbe:BBR47_00900 5.3e-52 ksgA; dimethyladenosine transferase K02528; Psort location: Cytoplasmic, score: 9.97; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
  
  
 0.652
KXA30517.1
KEGG: aur:HMPREF9243_0168 1.9e-127 ermC'; rRNA adenine N-6-methyltransferase K00561; Psort location: Cytoplasmic, score: 9.67.
  
  
 0.652
KXA31191.1
KEGG: bmq:BMQ_0078 1.2e-31 Tetrapyrrole (Corrin/Porphyrin) methylase, MazG protein K02499; Psort location: CytoplasmicMembrane, score: 8.16.
 
    0.555
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.551
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
     
 0.531
KXA30509.1
VanW-like protein; KEGG: mru:mru_1319 1.2e-05 DEAD/DEAH box helicase domain-containing protein; K03725 archaea-specific helicase.
 
     0.515
penA
Penicillin-binding protein, transpeptidase domain protein; KEGG: aoe:Clos_1373 1.9e-118 peptidoglycan glycosyltransferase K08384; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.491
ycfH
Hydrolase, TatD family; KEGG: faa:HMPREF0389_00352 3.5e-71 TatD family hydrolase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97.
     
 0.477
divIB
POTRA domain protein, FtsQ-type; Essential cell division protein.
  
     0.477
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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