STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA31195.1Transporter, auxin efflux carrier family protein; KEGG: azo:azo2550 3.7e-28 mdcF3; putative malonate transporter K07088; Psort location: CytoplasmicMembrane, score: 10.00. (317 aa)    
Predicted Functional Partners:
KXA31193.1
Hypothetical protein; KEGG: sud:ST398NM01_2520 1.0e-06 Diaminopimelate epimerase; Psort location: Cytoplasmic, score: 7.50.
 
     0.711
KXA31199.1
Polysaccharide deacetylase; KEGG: paw:PAZ_c03800 6.6e-45 N-acetylgalactosaminoglycan deacetylase; Psort location: Extracellular, score: 9.60.
 
    0.640
KXA27739.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.35.
 
     0.623
pbpD
Transglycosylase; KEGG: cst:CLOST_1328 5.7e-174 penicillin-binding protein, 1a family; K05366 penicillin-binding protein 1A; Psort location: CytoplasmicMembrane, score: 9.51.
 
     0.608
KXA31197.1
Hydrid cluster protein-associated redox disulfide domain protein; KEGG: cpy:Cphy_2846 1.2e-10 hydroxylamine reductase; K00378 hydroxylamine reductase; Psort location: Cytoplasmic, score: 7.50.
 
    0.601
KXA31196.1
Hypothetical protein.
       0.550
KXA31497.1
Hypothetical protein; KEGG: efc:EFAU004_01404 8.3e-11 IS1251-like transposase; Psort location: Cytoplasmic, score: 7.50.
  
     0.536
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
 
     0.530
metK_2
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
 0.477
gltX
glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
 
     0.432
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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