STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hgdA_6R-phenyllactate dehydratase, medium subunit; KEGG: fnu:FN0207 7.3e-213 (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit; Psort location: Cytoplasmic, score: 7.50. (440 aa)    
Predicted Functional Partners:
hgdB_8
KEGG: fnu:FN0208 1.3e-160 (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit K01726; Psort location: Cytoplasmic, score: 7.50.
 
 
 
 0.995
hgdC_7
(R)-2-hydroxyglutaryl-CoA dehydratase activator; KEGG: afn:Acfer_1816 2.0e-82 CoA-substrate-specific enzyme activase; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.974
gctA
KEGG: faa:HMPREF0389_01469 6.5e-125 glutaconate CoA transferase subunit A; K01039 glutaconate CoA-transferase, subunit A; Psort location: Cytoplasmic, score: 9.97.
 
     0.836
gctB
KEGG: faa:HMPREF0389_01470 7.2e-119 glutaconate CoA transferase subunit B; K01040 glutaconate CoA-transferase, subunit B; Psort location: Cytoplasmic, score: 9.97.
 
     0.828
gcdA
glutaconyl-CoA decarboxylase subunit alpha; KEGG: afn:Acfer_1817 9.0e-231 carboxyl transferase; K01615 glutaconyl-CoA decarboxylase; Psort location: Cytoplasmic, score: 7.50.
 
     0.825
hgdC_8
Putative CoA-substrate-specific enzyme activase; KEGG: bbp:BBPR_0457 0. (R)-2-hydroxyglutaryl-CoA dehydratase activator; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.608
KXA30848.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.557
KXA31193.1
Hypothetical protein; KEGG: sud:ST398NM01_2520 1.0e-06 Diaminopimelate epimerase; Psort location: Cytoplasmic, score: 7.50.
 
     0.468
KXA30964.1
Hypothetical protein; KEGG: llm:llmg_0877 2.3e-09 putative secreted protein K01347; Psort location: Cytoplasmic, score: 7.50.
 
     0.449
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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