STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnmVRibonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (183 aa)    
Predicted Functional Partners:
rsmA
KEGG: bbe:BBR47_00900 5.3e-52 ksgA; dimethyladenosine transferase K02528; Psort location: Cytoplasmic, score: 9.97; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
 
  
 0.912
ycfH
Hydrolase, TatD family; KEGG: faa:HMPREF0389_00352 3.5e-71 TatD family hydrolase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.871
metG_1
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.822
arsC
Putative protein ArsC; KEGG: dsy:DSY4671 1.4e-44 hypothetical protein; K03741 arsenate reductase; Psort location: Cytoplasmic, score: 7.50; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
      0.736
yocH
3D domain protein; KEGG: ssb:SSUBM407_0900 4.2e-07 zmpC; IgA-specific zinc metalloproteinase.
     
 0.531
ziaR
Transcriptional repressor SmtB family protein; KEGG: rru:Rru_A1450 7.6e-08 ArsR family transcriptional regulator K03741; Psort location: Cytoplasmic, score: 7.50.
       0.530
nrdH
Hypothetical protein; KEGG: mpl:Mpal_0406 8.3e-07 glutaredoxin; K03387 alkyl hydroperoxide reductase subunit F; Psort location: Cytoplasmic, score: 7.50.
 
     0.520
yeiH
Hypothetical protein; KEGG: hip:CGSHiEE_05910 6.4e-31 phosphoenolpyruvate carboxylase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.500
KXA31478.1
Tetratricopeptide repeat protein; KEGG: btl:BALH_3160 6.2e-05 response regulator aspartate phosphatase K06361; Psort location: Cytoplasmic, score: 7.50.
 
     0.460
KXA30517.1
KEGG: aur:HMPREF9243_0168 1.9e-127 ermC'; rRNA adenine N-6-methyltransferase K00561; Psort location: Cytoplasmic, score: 9.67.
  
  
 0.442
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.