STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yijE_2Putative membrane protein; KEGG: apb:SAR116_2069 1.4e-19 ABC transporter permease; Psort location: CytoplasmicMembrane, score: 10.00. (305 aa)    
Predicted Functional Partners:
tdcB_2
KEGG: apr:Apre_1062 8.6e-107 threonine dehydratase; K01754 threonine dehydratase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.581
ynaI
Transporter, small conductance mechanosensitive ion channel MscS family protein; KEGG: mla:Mlab_1701 2.6e-16 phosphoglycerate mutase K01834; Psort location: CytoplasmicMembrane, score: 9.99.
     
 0.563
KXA31017.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.542
KXA31019.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.542
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
       0.481
tagA
Glycosyltransferase, WecB/TagA/CpsF family; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
       0.403
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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