STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trkA_2Putative potassium transporter peripheral membrane component; KEGG: scp:HMPREF0833_11023 3.2e-61 ktrA; Trk family potassium (K+) transporter, NAD+ binding protein K03499; Psort location: CytoplasmicMembrane, score: 8.78. (466 aa)    
Predicted Functional Partners:
trkG
Potassium uptake protein, TrkH family; KEGG: ssr:SALIVB_0283 4.7e-67 DNA polymerase IV K03498; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.929
fieF
Cation diffusion facilitator family transporter; KEGG: bqy:MUS_3253 6.1e-35 cation efflux system protein; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.781
rsmB
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.641
ktrB
KEGG: ttm:Tthe_0887 8.8e-82 TrkH family potassium uptake protein K03498; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.609
porA
KEGG: fma:FMG_0385 0. pyruvate/ferredoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.512
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
 0.468
yajL
DJ-1 family protein; KEGG: scp:HMPREF0833_10842 4.7e-28 rimI; ribosomal-protein-alanine acetyltransferase K03152; Psort location: Cytoplasmic, score: 7.50.
       0.467
purL
KEGG: apr:Apre_1107 0. phosphoribosylformylglycinamidine synthase K01952; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.430
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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