Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
draGADP-ribosylglycohydrolase; KEGG: ssa:SSA_2189 2.5e-77 hypothetical protein; K05521 ADP-ribosylglycohydrolase; Psort location: Cytoplasmic, score: 7.50. (260 aa)    
Predicted Functional Partners:
ymdB
Macro domain protein; KEGG: bde:BDP_1359 2.0e-29 ATPase; Psort location: Cytoplasmic, score: 7.50.
    
 0.914
KXA28954.1
Phage portal protein, HK97 family.
   
   0.730
KXA31045.1
Erythromycin esterase; KEGG: gfo:GFO_0918 5.0e-31 ereB; erythromycin esterase type II K01066.
 
     0.633
KXA31043.1
Addiction module toxin, RelE/StbE family; Psort location: Cytoplasmic, score: 7.50.
       0.533
KXA31044.1
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein; Psort location: Cytoplasmic, score: 7.50.
       0.526
KXA31041.1
Copper amine oxidase domain protein; KEGG: amt:Amet_0953 3.5e-18 N-acetylmuramoyl-L-alanine amidase K01448.
       0.437
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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