STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytGKEGG: bsr:I33_3196 2.8e-30 Exo-glucosaminidase LytG; Psort location: Extracellular, score: 8.42. (190 aa)    
Predicted Functional Partners:
KXA30788.1
Hypothetical protein; KEGG: cbh:CLC_1639 0.0021 sensor histidine kinase.
  
  
 0.799
sulD
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
       0.795
KXA30878.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
KXA30875.1
HDIG domain protein; KEGG: drt:Dret_2207 0.00065 phosphodiesterase K06950; Psort location: Cytoplasmic, score: 7.50.
     
 0.759
folE
GTP cyclohydrolase I; KEGG: sne:SPN23F_02800 4.0e-70 folE; GTP cyclohydrolase I K01495; Psort location: Cytoplasmic, score: 7.50.
       0.757
KXA30879.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.741
KXA31799.1
Hypothetical protein; KEGG: efu:HMPREF0351_11193 2.7e-55 dihydrodipicolinate synthase/N-acetylneuraminate lyase; Psort location: Cytoplasmic, score: 7.50.
      0.726
dacA-2
KEGG: apr:Apre_1285 2.3e-51 serine-type D-Ala-D-Ala carboxypeptidase K07258; Psort location: CytoplasmicMembrane, score: 8.78; Belongs to the peptidase S11 family.
 
   
 0.567
lytC
KEGG: ccl:Clocl_1228 6.3e-45 N-acetylmuramoyl-L-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase; Psort location: Cellwall, score: 8.28.
 
  
 0.404
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.