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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tlyARibosomal RNA large subunit methyltransferase J; KEGG: aoe:Clos_1606 6.1e-74 hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase; Psort location: Cytoplasmic, score: 7.50. (266 aa)    
Predicted Functional Partners:
KXA30772.1
Geranyltranstransferase family protein; KEGG: cth:Cthe_0831 2.1e-57 farnesyl-diphosphate synthase K13789; Psort location: Cytoplasmic, score: 9.97.
  
    0.903
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
 
    0.843
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
  
    0.820
recN_1
DNA repair protein RecN; KEGG: apb:SAR116_2325 2.6e-57 ATPase K03631; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.820
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
    0.810
KXA30768.1
Hypothetical protein; KEGG: sbh:SBI_05389 0.0092 gyrA; DNA gyrase subunit A; K02469 DNA gyrase subunit A; Psort location: Cytoplasmic, score: 7.50.
  
    0.806
scpA
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
    0.804
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
    0.804
nudF
Hydrolase, NUDIX family; KEGG: aoe:Clos_1595 3.0e-40 NUDIX hydrolase; K01515 ADP-ribose pyrophosphatase; Psort location: Cytoplasmic, score: 7.50.
       0.795
KXA30778.1
Peptidase, M50 family; KEGG: bmq:BMQ_5195 1.6e-36 peptidase M50 (zinc protease); Psort location: CytoplasmicMembrane, score: 10.00.
       0.795
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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