Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXA30778.1Peptidase, M50 family; KEGG: bmq:BMQ_5195 1.6e-36 peptidase M50 (zinc protease); Psort location: CytoplasmicMembrane, score: 10.00. (210 aa)    
Predicted Functional Partners:
rluB
Pseudouridylate synthase; KEGG: tmt:Tmath_1182 1.8e-60 pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase; Psort location: Cytoplasmic, score: 9.97; Belongs to the pseudouridine synthase RsuA family.
 
     0.820
recN_1
DNA repair protein RecN; KEGG: apb:SAR116_2325 2.6e-57 ATPase K03631; Psort location: Cytoplasmic, score: 7.50.
       0.819
scpA
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
       0.819
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.819
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.818
KXA30772.1
Geranyltranstransferase family protein; KEGG: cth:Cthe_0831 2.1e-57 farnesyl-diphosphate synthase K13789; Psort location: Cytoplasmic, score: 9.97.
       0.818
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.816
nudF
Hydrolase, NUDIX family; KEGG: aoe:Clos_1595 3.0e-40 NUDIX hydrolase; K01515 ADP-ribose pyrophosphatase; Psort location: Cytoplasmic, score: 7.50.
     
 0.812
tlyA
Ribosomal RNA large subunit methyltransferase J; KEGG: aoe:Clos_1606 6.1e-74 hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.809
pdp
KEGG: tna:CTN_0734 7.6e-115 Pyrimidine-nucleoside phosphorylase; K00756 pyrimidine-nucleoside phosphorylase.
       0.809
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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