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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytpAHydrolase, alpha/beta domain protein; KEGG: ssd:SPSINT_1037 2.3e-28 Lysophospholipase; Monoglyceride lipase; Psort location: Cytoplasmic, score: 7.50. (354 aa)    
Predicted Functional Partners:
KXA31897.1
Hypothetical protein; KEGG: dbr:Deba_0784 8.4e-06 NADH-quinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E; Psort location: Cytoplasmic, score: 7.50.
   
   0.970
rnfB_2
Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.953
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.862
KXA29692.1
Acyl carrier protein; KEGG: eci:UTI89_C1220 1.1e-12 acpP; acyl carrier protein K02078; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.862
KXA30808.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.775
KXA30806.1
Copper amine oxidase domain protein; KEGG: phu:Phum_PHUM540970 4.9e-12 Titin, putative K14721; Psort location: Cellwall, score: 9.94.
     
 0.520
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
   0.420
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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