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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsEKEGG: pen:PSEEN2333 5.7e-87 XcpR-2; type II secretion pathway protein E K02454; Psort location: Cytoplasmic, score: 9.97. (481 aa)    
Predicted Functional Partners:
epsF
Bacterial type II secretion system protein F domain protein; KEGG: pfe:PSF113_5005 5.4e-27 pilC; protein PilC K02653; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.980
KXA30819.1
Hypothetical protein; KEGG: pfe:PSF113_5005 0.0016 pilC; protein PilC K02653.
  
 
 0.958
outO
Bacterial peptidase A24 protein; KEGG: clj:CLJU_c05610 7.7e-35 bifunctional type IV leader peptidase/N-methyltransferase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.952
KXA30368.1
Prepilin-type cleavage/methylation protein.
  
 
 0.935
smf
DNA protecting protein DprA; KEGG: ccm:Ccan_01460 1.2e-43 protein smf K04096; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.871
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.800
comM
Mg chelatase-like protein; KEGG: ccm:Ccan_16640 6.3e-127 competence protein comM K07391; Psort location: Cytoplasmic, score: 7.50.
     
 0.731
comEA
comEA protein; KEGG: has:Halsa_0780 1.8e-06 glycogen/starch synthase K00703; Psort location: CytoplasmicMembrane, score: 9.51.
  
  
 0.729
ssb
KEGG: shn:Shewana3_3590 3.1e-15 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.67.
  
  
 0.604
KXA28940.1
KEGG: shn:Shewana3_3590 2.0e-11 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.67.
  
  
 0.604
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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