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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA30391.1Flavoprotein family protein; KEGG: bsu:BSU30060 1.6e-41 ytfP; NAD(FAD) dehydrogenase K07007; Psort location: Cytoplasmic, score: 7.50. (400 aa)    
Predicted Functional Partners:
KXA30392.1
SAF domain protein; KEGG: bpu:BPUM_1429 2.2e-85 homoserine dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
       0.709
KXA30393.1
KEGG: apb:SAR116_0013 2.4e-08 BadM/Rrf2 family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
       0.563
ppaC
CBS domain protein; KEGG: fma:FMG_1581 6.1e-161 putative manganese-dependent inorganic pyrophosphatase; K15986 manganese-dependent inorganic pyrophosphatase; Psort location: Cytoplasmic, score: 9.97.
       0.561
yjjK
KEGG: bao:BAMF_0532 4.7e-131 ydiF; ABC transporter ATP-binding protein K06158; Psort location: Cytoplasmic, score: 9.95.
 
     0.402
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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