STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bigR_2Putative transcriptional repressor PagR; KEGG: apb:SAR116_2180 1.5e-06 ArsR family transcriptional regulator. (93 aa)    
Predicted Functional Partners:
addA
UvrD/REP helicase; ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
       0.742
KXA30410.1
butyryl-CoA:acetate CoA-transferase; KEGG: dat:HRM2_16060 1.9e-111 cat1; hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.675
copA
Copper-exporting ATPase; KEGG: apr:Apre_0987 8.9e-264 heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.538
porA
KEGG: fma:FMG_0385 0. pyruvate/ferredoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 7.50.
     
 0.449
sdpI
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.445
KXA30407.1
Copper amine oxidase domain protein; KEGG: bbe:BBR47_04720 5.5e-18 cwlU; hypothetical protein; K01448 N-acetylmuramoyl-L-alanine amidase.
  
    0.412
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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