STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA30462.1Hypothetical protein; KEGG: bbn:BbuN40_0633 0.00013 recB; exodeoxyribonuclease V subunit beta; Psort location: Cytoplasmic, score: 7.50. (247 aa)    
Predicted Functional Partners:
KXA30463.1
Hypothetical protein; KEGG: edi:EDI_341030 4.3e-07 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 7.50.
       0.773
KXA30464.1
TraB family protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.709
KXA30461.1
Positive regulator of sigma(E), RseC/MucC; Psort location: CytoplasmicMembrane, score: 8.16.
       0.562
aspS
aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.539
srrA_1
Putative transcriptional regulatory protein ResD; KEGG: eab:ECABU_c04760 1.1e-40 phoB; positive response regulator for pho regulon K07657; Psort location: Cytoplasmic, score: 9.97.
       0.410
phoR_3
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: awo:Awo_c07590 7.2e-71 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 8.78.
       0.410
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.