STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA30498.1Radical SAM protein family; KEGG: fnu:FN1142 1.1e-69 oxygen-independent coproporphyrinogen III oxidase K07139. (327 aa)    
Predicted Functional Partners:
KXA30782.1
Putative rRNA methylase; KEGG: hhd:HBHAL_3849 4.1e-29 ytqB; rRNA methylase YtqB; Psort location: Cytoplasmic, score: 7.50.
    0.832
KXA30497.1
Hypothetical protein; KEGG: efu:HMPREF0351_11643 3.4e-64 carB2; ATP-grasp superfamily protein.
       0.608
hemZ_2
Radical SAM protein family; KEGG: ctc:CTC01244 1.1e-76 oxygen-independent coproporphyrinogen III oxidase K00540; Psort location: Cytoplasmic, score: 7.50.
  
     0.604
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.563
KXA30499.1
Tetratricopeptide repeat protein; KEGG: ame:551425 1.1e-10 sxc; super sex combs; K09667 polypeptide N-acetylglucosaminyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.551
mepA_7
MATE efflux family protein; KEGG: rcp:RCAP_rcc02680 1.9e-25 mdtK; multidrug resistance protein MdtK K03327; Psort location: CytoplasmicMembrane, score: 10.00.
       0.551
KXA30502.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.537
tdk
Thymidine kinase; KEGG: fma:FMG_0715 1.9e-54 thymidine kinase; K00857 thymidine kinase; Psort location: Cytoplasmic, score: 9.97.
       0.533
psuK
HTH domain protein; KEGG: cbj:H04402_01237 3.1e-70 pseudouridine kinase; Psort location: Cytoplasmic, score: 7.50.
       0.451
psuG
Indigoidine synthase A-like protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
       0.431
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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