STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psuKHTH domain protein; KEGG: cbj:H04402_01237 3.1e-70 pseudouridine kinase; Psort location: Cytoplasmic, score: 7.50. (359 aa)    
Predicted Functional Partners:
psuG
Indigoidine synthase A-like protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
 
 0.995
KXA30506.1
Thioesterase family protein; KEGG: hhd:HBHAL_4546 1.7e-21 cytosolic long-chain acyl-CoA thioester hydrolase family protein; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.789
aldA
KEGG: ssm:Spirs_2638 4.2e-178 aldehyde dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.765
KXA30502.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
  
 0.704
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
  
 0.702
rbsA
Putative sugar ABC transporter, ATP binding protein; KEGG: amo:Anamo_0156 4.3e-160 ABC-type sugar transport system, ATPase component; K10441 ribose transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.648
pyk
Pyruvate kinase; KEGG: csc:Csac_1831 1.4e-163 pyruvate kinase; K00873 pyruvate kinase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.629
mepA_7
MATE efflux family protein; KEGG: rcp:RCAP_rcc02680 1.9e-25 mdtK; multidrug resistance protein MdtK K03327; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.629
tdk
Thymidine kinase; KEGG: fma:FMG_0715 1.9e-54 thymidine kinase; K00857 thymidine kinase; Psort location: Cytoplasmic, score: 9.97.
       0.624
KXA30499.1
Tetratricopeptide repeat protein; KEGG: ame:551425 1.1e-10 sxc; super sex combs; K09667 polypeptide N-acetylglucosaminyltransferase; Psort location: Cytoplasmic, score: 7.50.
     
 0.621
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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