STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA30510.1Hypothetical protein; KEGG: cno:NT01CX_0432 0.0040 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C. (193 aa)    
Predicted Functional Partners:
cvfB
S1 RNA binding domain protein; KEGG: mai:MICA_2002 8.5e-29 3-deoxy-7-phosphoheptulonate synthase K00243; Psort location: Cytoplasmic, score: 7.50; Belongs to the CvfB family.
       0.780
KXA30512.1
KEGG: sdg:SDE12394_07245 1.6e-89 tRNA (uracil-5-)-methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.775
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.491
KXA30509.1
VanW-like protein; KEGG: mru:mru_1319 1.2e-05 DEAD/DEAH box helicase domain-containing protein; K03725 archaea-specific helicase.
       0.491
KXA30507.1
Hypothetical protein; KEGG: adg:Adeg_1704 3.0e-10 adenosylcobinamide-phosphate guanylyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.446
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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