Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXA29441.1Abortive infection protein AbiGI family protein; Psort location: Cytoplasmic, score: 7.50. (197 aa)    
Predicted Functional Partners:
KXA29442.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.960
topB_2
KEGG: seq:SZO_12820 7.2e-245 DNA topoisomerase; K03169 DNA topoisomerase III; Psort location: Cytoplasmic, score: 9.97.
       0.582
KXA30529.1
Phage tail component protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.523
KXA31466.1
Toxin-antitoxin system, antitoxin component, HicB family.
 
     0.434
KXA29440.1
Hypothetical protein; KEGG: pic:PICST_74317 1.6e-06 TOP2; DNA topoisomerase II K03164.
       0.420
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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