Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KXA29537.1 | KXA29539.1 | HMPREF3229_01161 | HMPREF3229_01163 | RecF/RecN/SMC protein; KEGG: bce:BC1852 1.2e-29 exonuclease SbcC K03546. | Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. | 0.948 |
| KXA29537.1 | lexA | HMPREF3229_01161 | HMPREF3229_01170 | RecF/RecN/SMC protein; KEGG: bce:BC1852 1.2e-29 exonuclease SbcC K03546. | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.577 |
| KXA29537.1 | recA | HMPREF3229_01161 | HMPREF3229_01159 | RecF/RecN/SMC protein; KEGG: bce:BC1852 1.2e-29 exonuclease SbcC K03546. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.904 |
| KXA29539.1 | KXA29537.1 | HMPREF3229_01163 | HMPREF3229_01161 | Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. | RecF/RecN/SMC protein; KEGG: bce:BC1852 1.2e-29 exonuclease SbcC K03546. | 0.948 |
| KXA29539.1 | lexA | HMPREF3229_01163 | HMPREF3229_01170 | Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.577 |
| KXA29539.1 | recA | HMPREF3229_01163 | HMPREF3229_01159 | Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.909 |
| KXA29545.1 | lexA | HMPREF3229_01169 | HMPREF3229_01170 | LysM domain protein; KEGG: tye:THEYE_A1300 0.0018 endopeptidase LytE; Psort location: CytoplasmicMembrane, score: 9.87. | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.641 |
| KXA29545.1 | rny | HMPREF3229_01169 | HMPREF3229_01168 | LysM domain protein; KEGG: tye:THEYE_A1300 0.0018 endopeptidase LytE; Psort location: CytoplasmicMembrane, score: 9.87. | YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.506 |
| dinB_1 | dnaN | HMPREF3229_01889 | HMPREF3229_00723 | ImpB/MucB/SamB family protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.991 |
| dinB_1 | lexA | HMPREF3229_01889 | HMPREF3229_01170 | ImpB/MucB/SamB family protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.689 |
| dinB_1 | recA | HMPREF3229_01889 | HMPREF3229_01159 | ImpB/MucB/SamB family protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.811 |
| dinB_2 | dnaN | HMPREF3229_01299 | HMPREF3229_00723 | ImpB/MucB/SamB family protein; KEGG: ssr:SALIVB_0903 5.3e-162 dinB2; DNA polymerase IV 2 (Pol IV 2) K03502; Psort location: CytoplasmicMembrane, score: 8.16. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.991 |
| dinB_2 | lexA | HMPREF3229_01299 | HMPREF3229_01170 | ImpB/MucB/SamB family protein; KEGG: ssr:SALIVB_0903 5.3e-162 dinB2; DNA polymerase IV 2 (Pol IV 2) K03502; Psort location: CytoplasmicMembrane, score: 8.16. | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.749 |
| dinB_2 | recA | HMPREF3229_01299 | HMPREF3229_01159 | ImpB/MucB/SamB family protein; KEGG: ssr:SALIVB_0903 5.3e-162 dinB2; DNA polymerase IV 2 (Pol IV 2) K03502; Psort location: CytoplasmicMembrane, score: 8.16. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.811 |
| dnaN | dinB_1 | HMPREF3229_00723 | HMPREF3229_01889 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | ImpB/MucB/SamB family protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.991 |
| dnaN | dinB_2 | HMPREF3229_00723 | HMPREF3229_01299 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | ImpB/MucB/SamB family protein; KEGG: ssr:SALIVB_0903 5.3e-162 dinB2; DNA polymerase IV 2 (Pol IV 2) K03502; Psort location: CytoplasmicMembrane, score: 8.16. | 0.991 |
| dnaN | lexA | HMPREF3229_00723 | HMPREF3229_01170 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.481 |
| dnaN | recA | HMPREF3229_00723 | HMPREF3229_01159 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.926 |
| dpnA_3 | lexA | HMPREF3229_00280 | HMPREF3229_01170 | KEGG: cyj:Cyan7822_1878 2.6e-66 DNA methylase N-4/N-6 domain-containing protein; K07319 putative adenine-specific DNA-methyltransferase; Psort location: Cytoplasmic, score: 7.50; Belongs to the N(4)/N(6)-methyltransferase family. | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.818 |
| lexA | KXA29537.1 | HMPREF3229_01170 | HMPREF3229_01161 | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | RecF/RecN/SMC protein; KEGG: bce:BC1852 1.2e-29 exonuclease SbcC K03546. | 0.577 |
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