STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgcAKEGG: taf:THA_1027 9.4e-133 phosphoglucomutase/phosphomannomutase family protein; K01840 phosphomannomutase; Psort location: Cytoplasmic, score: 7.50. (554 aa)    
Predicted Functional Partners:
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
    
 0.877
deoC1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
 
  
 0.875
lacC
Hypothetical protein; KEGG: cbk:CLL_A3126 8.9e-18 pfkB; 1-phosphofructokinase K00917; Psort location: Cytoplasmic, score: 7.50.
     
 0.818
ybaK
YbaK/EbsC protein; KEGG: bya:BANAU_2580 2.8e-37 yjdI; prolyl-tRNA synthetase K03976; Psort location: Cytoplasmic, score: 7.50; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
     
 0.788
ycaC
Isochorismatase family protein; KEGG: ddf:DEFDS_0678 2.7e-32 isochorismatase hydrolase; Psort location: Cytoplasmic, score: 7.50.
     
 0.767
trpS
tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
      0.645
pabB
KEGG: ava:Ava_3468 3.2e-148 anthranilate synthase, component II K13950; Psort location: Cytoplasmic, score: 9.97.
     
 0.596
sbcD
Ser/Thr phosphatase family protein; KEGG: sax:USA300HOU_1836 3.9e-24 sbcD; DNA repair exonuclease; Psort location: Cytoplasmic, score: 7.50.
  
    0.579
dacA
TIGR00159 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
   
 
 0.578
pabC
KEGG: ccb:Clocel_0368 1.2e-45 class IV aminotransferase; K02619 4-amino-4-deoxychorismate lyase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.574
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.