STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgtPutative dGTPase; KEGG: eel:EUBELI_00675 3.8e-104 deoxyguanosinetriphosphate triphosphohydrolase-like protein; K01129 dGTPase; Psort location: Cytoplasmic, score: 7.50; Belongs to the dGTPase family. Type 2 subfamily. (337 aa)    
Predicted Functional Partners:
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
    
 0.916
ccpN
Putative transcriptional repressor CcpN; KEGG: ppo:PPM_2177 1.9e-38 yqzB; inosine-5'-monophosphate dehydrogenase IMP dehydrogenase; IMPDH; IMPD; Psort location: Cytoplasmic, score: 7.50.
     
 0.831
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
     
 0.814
trmK
Hypothetical protein; KEGG: twi:Thewi_1680 2.6e-34 hypothetical protein; K06967 tRNA (adenine22-N1)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.812
KXA29610.1
Dinuclear metal center protein, YbgI family; KEGG: hip:CGSHiEE_02770 7.4e-14 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 7.50.
       0.808
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
     
 0.808
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
     
 0.806
yqfL
Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.
       0.795
glyS
glycine--tRNA ligase, beta subunit; KEGG: cdl:CDR20291_2324 8.5e-171 glyS; glycyl-tRNA synthetase subunit beta; K01879 glycyl-tRNA synthetase beta chain; Psort location: Cytoplasmic, score: 9.97.
  
    0.792
glyQ
glycine--tRNA ligase, alpha subunit; KEGG: cdc:CD196_2278 2.8e-117 glyQ; glycyl-tRNA synthetase subunit alpha; K01878 glycyl-tRNA synthetase alpha chain; Psort location: Cytoplasmic, score: 9.97.
  
    0.789
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.