Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cddCytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (137 aa)    
Predicted Functional Partners:
pdp
KEGG: tna:CTN_0734 7.6e-115 Pyrimidine-nucleoside phosphorylase; K00756 pyrimidine-nucleoside phosphorylase.
 
 0.996
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
  
 0.985
tdk
Thymidine kinase; KEGG: fma:FMG_0715 1.9e-54 thymidine kinase; K00857 thymidine kinase; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.940
udk
Uridine kinase; KEGG: aoe:Clos_1655 5.8e-69 uridine kinase; K00876 uridine kinase; Psort location: Cytoplasmic, score: 9.97.
    
 0.925
yfkN
KEGG: rho:RHOM_15950 1.0e-112 5'-nucleotidase domain-containing protein; K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Psort location: Cellwall, score: 8.97; Belongs to the 5'-nucleotidase family.
    
 0.913
surE_3
5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
 0.905
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
  
 0.881
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
  
 0.873
ybeZ
Putative PhoH-like protein; KEGG: ttu:TERTU_3875 1.1e-74 phosphate starvation-inducible protein PhoH family protein, ATPase K06217; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.862
glyQ
glycine--tRNA ligase, alpha subunit; KEGG: cdc:CD196_2278 2.8e-117 glyQ; glycyl-tRNA synthetase subunit alpha; K01878 glycyl-tRNA synthetase alpha chain; Psort location: Cytoplasmic, score: 9.97.
     
 0.823
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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