Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXA29628.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (294 aa)    
Predicted Functional Partners:
cobD
Putative histidinol-phosphate transaminase; KEGG: faa:HMPREF0389_00117 1.5e-86 histidinol-phosphate aminotransferase; K04720 threonine-phosphate decarboxylase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.620
thrC_5
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate.
  
 
 0.595
KXA29625.1
Hypothetical protein; KEGG: ddi:DDB_G0274493 2.4e-11 lig1; DNA ligase I; K10747 DNA ligase 1; Psort location: Cytoplasmic, score: 7.50.
       0.576
KXA29626.1
Hypothetical protein; KEGG: mir:OCQ_01980 0.0074 seryl-tRNA synthetase K01875; Psort location: Cytoplasmic, score: 7.50.
       0.576
KXA29627.1
Nodulation efficiency protein D; KEGG: bpu:BPUM_2272 6.6e-29 yqeZ; serine peptidase K07403; Psort location: CytoplasmicMembrane, score: 10.00.
       0.576
yqeY
YqeY-like protein; KEGG: efc:EFAU004_01997 1.2e-29 Glutamyl-tRNA(Gln) amidotransferase subunit E K09117; Psort location: Cytoplasmic, score: 7.50.
       0.516
rpsU
Ribosomal protein S21; KEGG: sew:SeSA_A3399 2.7e-09 rpsU; 30S ribosomal protein S21 K02970; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bS21 family.
       0.516
trmK
Hypothetical protein; KEGG: twi:Thewi_1680 2.6e-34 hypothetical protein; K06967 tRNA (adenine22-N1)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
     0.494
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
 
     0.473
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.460
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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