STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA29628.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (294 aa)    
Predicted Functional Partners:
cobD
Putative histidinol-phosphate transaminase; KEGG: faa:HMPREF0389_00117 1.5e-86 histidinol-phosphate aminotransferase; K04720 threonine-phosphate decarboxylase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.583
KXA29627.1
Nodulation efficiency protein D; KEGG: bpu:BPUM_2272 6.6e-29 yqeZ; serine peptidase K07403; Psort location: CytoplasmicMembrane, score: 10.00.
       0.579
KXA29625.1
Hypothetical protein; KEGG: ddi:DDB_G0274493 2.4e-11 lig1; DNA ligase I; K10747 DNA ligase 1; Psort location: Cytoplasmic, score: 7.50.
       0.576
KXA29626.1
Hypothetical protein; KEGG: mir:OCQ_01980 0.0074 seryl-tRNA synthetase K01875; Psort location: Cytoplasmic, score: 7.50.
       0.576
yqeY
YqeY-like protein; KEGG: efc:EFAU004_01997 1.2e-29 Glutamyl-tRNA(Gln) amidotransferase subunit E K09117; Psort location: Cytoplasmic, score: 7.50.
       0.516
rpsU
Ribosomal protein S21; KEGG: sew:SeSA_A3399 2.7e-09 rpsU; 30S ribosomal protein S21 K02970; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bS21 family.
       0.516
thrC_5
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate.
  
 
 0.503
trmK
Hypothetical protein; KEGG: twi:Thewi_1680 2.6e-34 hypothetical protein; K06967 tRNA (adenine22-N1)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
     0.494
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
 
     0.476
ccpN
Putative transcriptional repressor CcpN; KEGG: ppo:PPM_2177 1.9e-38 yqzB; inosine-5'-monophosphate dehydrogenase IMP dehydrogenase; IMPDH; IMPD; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.461
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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